species:   Fugra
pid:       PID0906
parent:    FgmilR-7dps-126
paralog:   
locus:     NC_026476.1:1221749-1221829
matures:   ['AGGCGUUUGUCGGUAUGGGCC', 'CCCAUAUGCGGCAUCGUCUACAUC']
srr:       SRR6516245
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516245.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516245.cram NC_026476.1:1221749-1221829

3 out of bounds
6 alignments
6 proper strand
4 stranded perfect matches

               **************************                 ***********************
UACAGAUGGCACCAUUGCCCAUAUGCGGCAUCGUCUACAUCGCGACCCCGGAGGUUUAGAAGGCGUUUGUCGGUAUGGGCC
....((((....))))((((((((.(((((.(((((...((..((((.....))))..)))))))..))))))))))))).
------------------------------------------------------------AGGCGUUUGUCGGUAUGGGCC l=21 a=2 c
-----------------CCCAUAUGCGGCAUCGUCUACAUC---------------------------------------- l=24 a=0 c*
------------------------------------------------------------AGGCGUUUGUCGGUAUGGGCC l=21 a=2 ma
-----------------CCCAUAUGCGGCAUCGUCUACAUC---------------------------------------- l=24 a=0 ma*

------------------------------------------------------------AGGCGUUUGUCGGUAUGG--- l=18 a=1 
------------------------------------------------------------AGGCGUUUGUCGGUAUGGGCu l=21 a=1 
------------------------------------------------------------AGGCGUUUGUCGGUAUGGGCC l=21 a=2 (c,ma)
------------------------------------------------------------AGGCGUUUGUCGGUAUGGGCa l=21 a=1 
-------------------------------------------------------------GGCGUUUGUCGGUAUGGGC- l=19 a=1 

mb-00011
ax-1011010
ku-01
ss-101111110100
fn-010
